IL_8QFD_105

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAGG*CGCCGGUGAAAUAC

Length

19 nucleotides

Bulged bases

8QFD|1|5|A|4046, 8QFD|1|5|A|4047

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|G|3970
8QFD|1|5|G|3971
8QFD|1|5|A|3972
8QFD|1|5|G|3973
8QFD|1|5|G|3974
*
8QFD|1|5|C|4038
8QFD|1|5|G|4039
8QFD|1|5|C|4040
8QFD|1|5|C|4041
8QFD|1|5|G|4042
8QFD|1|5|G|4043
8QFD|1|5|U|4044
8QFD|1|5|G|4045
8QFD|1|5|A|4046
8QFD|1|5|A|4047
8QFD|1|5|A|4048
8QFD|1|5|U|4049
8QFD|1|5|A|4050
8QFD|1|5|C|4051

Current chains

Chain 5

28S rRNA

Nearby chains