IL_8QFD_117
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_117 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.141
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8QFD|1|5|C|4412
8QFD|1|5|C|4413
8QFD|1|5|A|4414
8QFD|1|5|A|4415
8QFD|1|5|G|4416
*
8QFD|1|5|C|4426
8QFD|1|5|G|4427
8QFD|1|5|A|4428
8QFD|1|5|C|4429
8QFD|1|5|G|4430
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain m
- Ubiquitin-60S ribosomal protein L40
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