IL_8QFD_136

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8QFD|1|5|C|4757, 8QFD|1|5|U|4758, 8QFD|1|5|A|4764, 8QFD|1|5|G|4869, 8QFD|1|5|C|4870, 8QFD|1|5|G|4872, 8QFD|1|5|U|4875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|4756
8QFD|1|5|C|4757
8QFD|1|5|U|4758
8QFD|1|5|C|4759
8QFD|1|5|G|4760
8QFD|1|5|G|4761
8QFD|1|5|A|4762
8QFD|1|5|U|4763
8QFD|1|5|A|4764
8QFD|1|5|G|4765
*
8QFD|1|5|U|4868
8QFD|1|5|G|4869
8QFD|1|5|C|4870
8QFD|1|5|G|4871
8QFD|1|5|G|4872
8QFD|1|5|A|4873
8QFD|1|5|G|4874
8QFD|1|5|U|4875
8QFD|1|5|G|4876

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain H

60S ribosomal protein L9

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13a

Chain S

60S ribosomal protein L18a