IL_8QFD_142

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8QFD|1|5|G|5040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|U|5002
8QFD|1|5|C|5003
8QFD|1|5|G|5004
8QFD|1|5|U|5005
8QFD|1|5|A|5006
8QFD|1|5|C|5007
8QFD|1|5|G|5008
*
8QFD|1|5|U|5038
8QFD|1|5|U|5039
8QFD|1|5|G|5040
8QFD|1|5|A|5041
8QFD|1|5|A|5042
8QFD|1|5|A|5043

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L24

Chain d

60S ribosomal protein L31