IL_8QFD_154

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

8QFD|1|5|G|1351, 8QFD|1|5|C|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|1349
8QFD|1|5|G|1350
8QFD|1|5|G|1351
8QFD|1|5|G|1352
8QFD|1|5|G|1353
*
8QFD|1|5|C|1368
8QFD|1|5|G|1369
8QFD|1|5|C|1370
8QFD|1|5|C|1371
8QFD|1|5|G|1372
8QFD|1|5|U|1373
8QFD|1|5|G|1374

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

60S ribosomal protein L13

Chain N

60S ribosomal protein L15

Chain a

60S ribosomal protein L27a