IL_8QLP_004
3D structure
- PDB id
- 8QLP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- UAAU*ATTA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QLP|1|G|U|10
8QLP|1|G|A|11
8QLP|1|G|A|12
8QLP|1|G|U|13
*
8QLP|1|H|DA|9
8QLP|1|H|DT|10
8QLP|1|H|DT|11
8QLP|1|H|DA|12
Current chains
- Chain G
- RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3')
- Chain H
- DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3')
Nearby chains
- Chain E
- Toll/interleukin-1 receptor domain-containing protein
- Chain F
- Short prokaryotic Argonaute
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