IL_8QO9_008
3D structure
- PDB id
- 8QO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosomal B complex protomer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.29 Å
Loop
- Sequence
- CUGGU*ACAACUCUG
- Length
- 14 nucleotides
- Bulged bases
- 8QO9|1|5|C|68
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QO9|1|5|C|6
8QO9|1|5|U|7
8QO9|1|5|G|8
8QO9|1|5|G|9
8QO9|1|5|U|10
*
8QO9|1|5|A|67
8QO9|1|5|C|68
8QO9|1|5|A|69
8QO9|1|5|A|70
8QO9|1|5|C|71
8QO9|1|5|U|72
8QO9|1|5|C|73
8QO9|1|5|U|74
8QO9|1|5|G|75
Current chains
- Chain 5
- U5 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- 116 kDa U5 small nuclear ribonucleoprotein component
- Chain E
- U5 small nuclear ribonucleoprotein 40 kDa protein
- Chain Q
- Protein BUD31 homolog
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