IL_8QOA_022

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AAAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_022 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3181

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8QOA|1|A|A|459
8QOA|1|A|A|460
8QOA|1|A|A|461
8QOA|1|A|G|462
*
8QOA|1|A|C|470
8QOA|1|A|U|471
8QOA|1|A|U|472
8QOA|1|A|U|473

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16