IL_8QOA_058

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_058 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1318

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8QOA|1|A|G|1405
8QOA|1|A|U|1406
8QOA|1|A|C|1407
*
8QOA|1|A|G|1494
8QOA|1|A|U|1495
8QOA|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA

Chain Y

Transfer RNA; tRNA

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA