IL_8QOA_063

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUAG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_063 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2417

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

8QOA|1|A|G|1439
8QOA|1|A|U|1440
8QOA|1|A|A|1441
8QOA|1|A|G|1442
*
8QOA|1|A|C|1460
8QOA|1|A|G|1461
8QOA|1|A|C|1462

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain o

Large ribosomal subunit protein bL19