IL_8QOA_073

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.379

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8QOA|1|a|C|274
8QOA|1|a|C|275
8QOA|1|a|U|276
8QOA|1|a|G|277
8QOA|1|a|A|278
8QOA|1|a|A|279
8QOA|1|a|U|280
8QOA|1|a|C|281
*
8QOA|1|a|G|359
8QOA|1|a|U|360
8QOA|1|a|G|361
8QOA|1|a|A|362
8QOA|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains