IL_8QOA_127

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8QOA|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_127 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0819

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8QOA|1|a|U|1712
8QOA|1|a|A|1713
8QOA|1|a|U|1714
8QOA|1|a|G|1715
8QOA|1|a|U|1716
8QOA|1|a|A|1717
8QOA|1|a|G|1718
*
8QOA|1|a|U|1742
8QOA|1|a|G|1743
8QOA|1|a|A|1744
8QOA|1|a|A|1745
8QOA|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains