IL_8QOA_149
3D structure
- PDB id
- 8QOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SecM-stalled Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- C(PSU)GA*UGG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOA_149 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3171
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
8QOA|1|a|C|2456
8QOA|1|a|PSU|2457
8QOA|1|a|G|2458
8QOA|1|a|A|2459
*
8QOA|1|a|U|2493
8QOA|1|a|G|2494
8QOA|1|a|G|2495
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: