IL_8QOA_152

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGG*C(PSU)GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_152 not in the Motif Atlas

Homologous match to IL_5J7L_339

Geometric discrepancy: 0.0484

The information below is about IL_5J7L_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOA|1|a|C|2507
8QOA|1|a|G|2508
8QOA|1|a|G|2509
*
8QOA|1|a|C|2579
8QOA|1|a|PSU|2580
8QOA|1|a|G|2581
8QOA|1|a|G|2582

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Secretion monitor

Chain Y

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3