IL_8QOI_012

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

8QOI|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|180
8QOI|1|L5|C|181
8QOI|1|L5|G|182
8QOI|1|L5|C|183
8QOI|1|L5|U|184
8QOI|1|L5|C|185
8QOI|1|L5|G|186
8QOI|1|L5|U|187
8QOI|1|L5|G|188
8QOI|1|L5|G|189
*
8QOI|1|L5|C|252
8QOI|1|L5|G|253
8QOI|1|L5|G|254
8QOI|1|L5|C|255
8QOI|1|L5|G|256

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LY

60S ribosomal protein L26

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37