IL_8QOI_014

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8QOI|1|L5|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_014 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.1479

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8QOI|1|L5|G|199
8QOI|1|L5|U|200
8QOI|1|L5|C|201
*
8QOI|1|L5|G|214
8QOI|1|L5|C|215

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

60S ribosomal protein L26