IL_8QOI_018

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUU*G(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_018 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1414

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8QOI|1|L5|C|390
8QOI|1|L5|U|391
8QOI|1|L5|U|392
*
8QOI|1|L5|G|399
8QOI|1|L5|A2M|400
8QOI|1|L5|G|401

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26