IL_8QOI_019
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_019 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0668
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8QOI|1|L5|G|415
8QOI|1|L5|U|416
8QOI|1|L5|G|417
8QOI|1|L5|A|418
8QOI|1|L5|A|419
8QOI|1|L5|A|420
8QOI|1|L5|C|421
*
8QOI|1|L8|G|13
8QOI|1|L8|OMU|14
8QOI|1|L8|G|15
8QOI|1|L8|G|16
8QOI|1|L8|A|17
8QOI|1|L8|U|18
8QOI|1|L8|C|19
Current chains
- Chain L5
- 28S rRNA (3773-MER)
- Chain L8
- 5.8S rRNA (156-MER)
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LP
- 60S ribosomal protein L17
- Chain Le
- 60S ribosomal protein L32
- Chain Ll
- 60S ribosomal protein L39
Coloring options: