IL_8QOI_030

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GCCCGG*UCC

Length

9 nucleotides

Bulged bases

8QOI|1|L5|C|501, 8QOI|1|L5|C|502, 8QOI|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_030 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.3361

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8QOI|1|L5|G|500
8QOI|1|L5|C|501
8QOI|1|L5|C|502
8QOI|1|L5|C|503
8QOI|1|L5|G|504
8QOI|1|L5|G|505
*
8QOI|1|L5|U|653
8QOI|1|L5|C|654
8QOI|1|L5|C|655

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LQ

60S ribosomal protein L18