IL_8QOI_033

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8QOI|1|L5|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_033 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2289

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8QOI|1|L5|A|723
8QOI|1|L5|C|724
*
8QOI|1|L5|G|942
8QOI|1|L5|A|943
8QOI|1|L5|A|944
8QOI|1|L5|U|945

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LF

Large ribosomal subunit protein uL30