IL_8QOI_034

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

8QOI|1|L5|G|729, 8QOI|1|L5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_034 not in the Motif Atlas

Geometric match to IL_2QWY_008

Geometric discrepancy: 0.3727

The information below is about IL_2QWY_008

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_75501.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8QOI|1|L5|C|727
8QOI|1|L5|U|728
8QOI|1|L5|G|729
8QOI|1|L5|G|730
8QOI|1|L5|G|731
*
8QOI|1|L5|C|938
8QOI|1|L5|G|939

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a