IL_8QOI_035

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8QOI|1|L5|A|932, 8QOI|1|L5|C|934, 8QOI|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|A|732
8QOI|1|L5|A|733
8QOI|1|L5|G|734
8QOI|1|L5|G|735
*
8QOI|1|L5|C|928
8QOI|1|L5|A|929
8QOI|1|L5|G|930
8QOI|1|L5|C|931
8QOI|1|L5|A|932
8QOI|1|L5|G|933
8QOI|1|L5|C|934
8QOI|1|L5|A|935
8QOI|1|L5|C|936
8QOI|1|L5|U|937

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a