IL_8QOI_035
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AAGG*CAGCAGCACU
- Length
- 14 nucleotides
- Bulged bases
- 8QOI|1|L5|A|932, 8QOI|1|L5|C|934, 8QOI|1|L5|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_035 not in the Motif Atlas
- Homologous match to IL_8GLP_037
- Geometric discrepancy: 0.0671
- The information below is about IL_8GLP_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70469.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8QOI|1|L5|A|732
8QOI|1|L5|A|733
8QOI|1|L5|G|734
8QOI|1|L5|G|735
*
8QOI|1|L5|C|928
8QOI|1|L5|A|929
8QOI|1|L5|G|930
8QOI|1|L5|C|931
8QOI|1|L5|A|932
8QOI|1|L5|G|933
8QOI|1|L5|C|934
8QOI|1|L5|A|935
8QOI|1|L5|C|936
8QOI|1|L5|U|937
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LM
- 60S ribosomal protein L14
- Chain LS
- 60S ribosomal protein L18a
Coloring options: