IL_8QOI_038

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAAGGUGGC*GUGUUACAGC

Length

19 nucleotides

Bulged bases

8QOI|1|L5|G|748, 8QOI|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|745
8QOI|1|L5|A|746
8QOI|1|L5|A|747
8QOI|1|L5|G|748
8QOI|1|L5|G|749
8QOI|1|L5|U|750
8QOI|1|L5|G|751
8QOI|1|L5|G|752
8QOI|1|L5|C|753
*
8QOI|1|L5|G|910
8QOI|1|L5|U|911
8QOI|1|L5|G|912
8QOI|1|L5|U|913
8QOI|1|L5|U|914
8QOI|1|L5|A|915
8QOI|1|L5|C|916
8QOI|1|L5|A|917
8QOI|1|L5|G|918
8QOI|1|L5|C|919

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a