IL_8QOI_043

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8QOI|1|L5|C|1214, 8QOI|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_043 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.2685

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8QOI|1|L5|C|1082
8QOI|1|L5|U|1083
8QOI|1|L5|C|1084
*
8QOI|1|L5|G|1213
8QOI|1|L5|C|1214
8QOI|1|L5|C|1215
8QOI|1|L5|C|1216
8QOI|1|L5|G|1217

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

60S ribosomal protein L29