IL_8QOI_058

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

8QOI|1|L5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_058 not in the Motif Atlas

Homologous match to IL_8GLP_055

Geometric discrepancy: 0.0549

The information below is about IL_8GLP_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

8QOI|1|L5|G|1479
8QOI|1|L5|C|1480
*
8QOI|1|L5|G|1484
8QOI|1|L5|C|1485
8QOI|1|L5|C|1486

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

Large ribosomal subunit protein uL15

Chain Li

60S ribosomal protein L36