IL_8QOI_059

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

8QOI|1|L5|A|1650, 8QOI|1|L5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|1520
8QOI|1|L5|C|1521
8QOI|1|L5|OMG|1522
8QOI|1|L5|A|1523
8QOI|1|L5|A2M|1524
8QOI|1|L5|A|1525
8QOI|1|L5|G|1526
*
8QOI|1|L5|C|1648
8QOI|1|L5|U|1649
8QOI|1|L5|A|1650
8QOI|1|L5|G|1651
8QOI|1|L5|U|1652
8QOI|1|L5|A|1653
8QOI|1|L5|G|1654
8QOI|1|L5|C|1655
8QOI|1|L5|U|1656
8QOI|1|L5|G|1657

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

Large ribosomal subunit protein uL15

Chain Lj

60S ribosomal protein L37