IL_8QOI_068

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8QOI|1|L5|A|1701, 8QOI|1|L5|C|1702, 8QOI|1|L5|C|1703, 8QOI|1|L5|G|1708, 8QOI|1|L5|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|1694
8QOI|1|L5|U|1695
8QOI|1|L5|C|1696
8QOI|1|L5|G|1697
8QOI|1|L5|C|1698
8QOI|1|L5|A|1699
8QOI|1|L5|G|1700
8QOI|1|L5|A|1701
8QOI|1|L5|C|1702
8QOI|1|L5|C|1703
8QOI|1|L5|C|1704
8QOI|1|L5|G|1705
8QOI|1|L5|A|1706
8QOI|1|L5|C|1707
8QOI|1|L5|G|1708
8QOI|1|L5|C|1709
8QOI|1|L5|C|1714
8QOI|1|L5|C|1715
8QOI|1|L5|G|1716
8QOI|1|L5|C|1717
8QOI|1|L5|C|1718
8QOI|1|L5|A|1719
8QOI|1|L5|C|1720
8QOI|1|L5|G|1721
*
8QOI|1|L5|C|1841
8QOI|1|L5|G|1842

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LF

Large ribosomal subunit protein uL30

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29