IL_8QOI_069

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8QOI|1|L5|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_069 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0979

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8QOI|1|L5|A|1723
8QOI|1|L5|G|1724
8QOI|1|L5|U|1725
*
8QOI|1|L5|A|1838
8QOI|1|L5|U|1839

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29