IL_8QOI_095

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGAUGG*CCGUUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|2482
8QOI|1|L5|G|2483
8QOI|1|L5|A|2484
8QOI|1|L5|U|2485
8QOI|1|L5|G|2486
8QOI|1|L5|G|2487
*
8QOI|1|L5|C|2491
8QOI|1|L5|C|2492
8QOI|1|L5|G|2493
8QOI|1|L5|U|2494
8QOI|1|L5|U|2495
8QOI|1|L5|G|2496

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a