IL_8QOI_104

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAACAA(OMU)G*C(PSU)A(PSU)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|2831
8QOI|1|L5|A|2832
8QOI|1|L5|A|2833
8QOI|1|L5|C|2834
8QOI|1|L5|A|2835
8QOI|1|L5|A|2836
8QOI|1|L5|OMU|2837
8QOI|1|L5|G|2838
*
8QOI|1|L5|C|3850
8QOI|1|L5|PSU|3851
8QOI|1|L5|A|3852
8QOI|1|L5|PSU|3853
8QOI|1|L5|C|3854

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31