IL_8QOI_112

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

8QOI|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|2901
8QOI|1|L5|G|2902
8QOI|1|L5|G|2903
8QOI|1|L5|U|2904
8QOI|1|L5|C|2905
*
8QOI|1|L5|G|3589
8QOI|1|L5|G|3590
8QOI|1|L5|C|3591
8QOI|1|L5|G|3592
8QOI|1|L5|C|3593
8QOI|1|L5|C|3594
8QOI|1|L5|U|3595
8QOI|1|L5|A|3596
8QOI|1|L5|G|3597
8QOI|1|L5|C|3598

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11