IL_8QOI_125

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_125 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1929

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8QOI|1|L5|G|3753
8QOI|1|L5|G|3754
8QOI|1|L5|G|3755
*
8QOI|1|L5|C|3769
8QOI|1|L5|PSU|3770
8QOI|1|L5|C|3771

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA