IL_8QOI_138
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAG*CGAC
- Length
- 43 nucleotides
- Bulged bases
- 8QOI|1|L5|C|4096, 8QOI|1|L5|C|4101, 8QOI|1|L5|G|4104, 8QOI|1|L5|G|4115, 8QOI|1|L5|C|4116, 8QOI|1|L5|U|4117, 8QOI|1|L5|U|4118, 8QOI|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QOI|1|L5|G|4091
8QOI|1|L5|G|4092
8QOI|1|L5|G|4093
8QOI|1|L5|G|4094
8QOI|1|L5|G|4095
8QOI|1|L5|C|4096
8QOI|1|L5|G|4097
8QOI|1|L5|A|4098
8QOI|1|L5|G|4099
8QOI|1|L5|C|4100
8QOI|1|L5|C|4101
8QOI|1|L5|C|4102
8QOI|1|L5|C|4103
8QOI|1|L5|G|4104
8QOI|1|L5|A|4105
8QOI|1|L5|G|4106
8QOI|1|L5|G|4107
8QOI|1|L5|G|4108
8QOI|1|L5|G|4109
8QOI|1|L5|C|4110
8QOI|1|L5|U|4111
8QOI|1|L5|C|4112
8QOI|1|L5|U|4113
8QOI|1|L5|C|4114
8QOI|1|L5|G|4115
8QOI|1|L5|C|4116
8QOI|1|L5|U|4117
8QOI|1|L5|U|4118
8QOI|1|L5|C|4119
8QOI|1|L5|U|4120
8QOI|1|L5|G|4121
8QOI|1|L5|G|4122
8QOI|1|L5|C|4123
8QOI|1|L5|G|4124
8QOI|1|L5|C|4125
8QOI|1|L5|C|4126
8QOI|1|L5|A|4127
8QOI|1|L5|A|4128
8QOI|1|L5|G|4129
*
8QOI|1|L5|C|4155
8QOI|1|L5|G|4156
8QOI|1|L5|A|4157
8QOI|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
Coloring options: