IL_8QOI_144

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGC(PSU)UG*UGA(PSU)CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|4400
8QOI|1|L5|G|4401
8QOI|1|L5|C|4402
8QOI|1|L5|PSU|4403
8QOI|1|L5|U|4404
8QOI|1|L5|G|4405
*
8QOI|1|L5|U|4439
8QOI|1|L5|G|4440
8QOI|1|L5|A|4441
8QOI|1|L5|PSU|4442
8QOI|1|L5|C|4443
8QOI|1|L5|C|4444

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29