IL_8QOI_147

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_147 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1555

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8QOI|1|L5|C|4412
8QOI|1|L5|C|4413
8QOI|1|L5|A|4414
8QOI|1|L5|A|4415
8QOI|1|L5|G|4416
*
8QOI|1|L5|C|4426
8QOI|1|L5|G|4427
8QOI|1|L5|A|4428
8QOI|1|L5|C|4429
8QOI|1|L5|G|4430

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40