IL_8QOI_155

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_155 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.3024

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8QOI|1|L5|A|4535
8QOI|1|L5|OMC|4536
8QOI|1|L5|C|4537
*
8QOI|1|L5|G|4549
8QOI|1|L5|G|4550
8QOI|1|L5|U|4551

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8