IL_8QOI_157

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

G(PSU)U*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_157 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.2714

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8QOI|1|L5|G|4575
8QOI|1|L5|PSU|4576
8QOI|1|L5|U|4577
*
8QOI|1|L5|G|4726
8QOI|1|L5|A|4727
8QOI|1|L5|U|4728

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LB

Large ribosomal subunit protein uL3