IL_8QOI_162

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

A(OMG)ACAU(PSU)U*ACCA(PSU)CU

Length

15 nucleotides

Bulged bases

8QOI|1|L5|C|4670

QA status

Modified nucleotides: OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|A|4622
8QOI|1|L5|OMG|4623
8QOI|1|L5|A|4624
8QOI|1|L5|C|4625
8QOI|1|L5|A|4626
8QOI|1|L5|U|4627
8QOI|1|L5|PSU|4628
8QOI|1|L5|U|4629
*
8QOI|1|L5|A|4669
8QOI|1|L5|C|4670
8QOI|1|L5|C|4671
8QOI|1|L5|A|4672
8QOI|1|L5|PSU|4673
8QOI|1|L5|C|4674
8QOI|1|L5|U|4675

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24