IL_8QOI_167

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGCGG*CCUG

Length

9 nucleotides

Bulged bases

8QOI|1|L5|C|4741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_167 not in the Motif Atlas

Homologous match to IL_8GLP_166

Geometric discrepancy: 0.4591

The information below is about IL_8GLP_166

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

8QOI|1|L5|C|4739
8QOI|1|L5|G|4740
8QOI|1|L5|C|4741
8QOI|1|L5|G|4742
8QOI|1|L5|G|4743
*
8QOI|1|L5|C|4957
8QOI|1|L5|C|4958
8QOI|1|L5|U|4959
8QOI|1|L5|G|4960

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains