IL_8QOI_178

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8QOI|1|L5|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|U|5003
8QOI|1|L5|C|5004
8QOI|1|L5|G|5005
8QOI|1|L5|U|5006
8QOI|1|L5|A|5007
8QOI|1|L5|C|5008
8QOI|1|L5|G|5009
*
8QOI|1|L5|U|5039
8QOI|1|L5|U|5040
8QOI|1|L5|G|5041
8QOI|1|L5|A|5042
8QOI|1|L5|A|5043
8QOI|1|L5|A|5044

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31