IL_8QOI_206

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_206 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2034

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8QOI|1|S2|C|188
8QOI|1|S2|U|189
8QOI|1|S2|G|190
8QOI|1|S2|A|191
8QOI|1|S2|C|192
*
8QOI|1|S2|G|207
8QOI|1|S2|G|208
8QOI|1|S2|A|209
8QOI|1|S2|U|210
8QOI|1|S2|G|211

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SI

40S ribosomal protein S8