IL_8QOI_213

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

C(PSU)UUCGA*UGG

Length

10 nucleotides

Bulged bases

8QOI|1|S2|U|368, 8QOI|1|S2|C|369

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|C|365
8QOI|1|S2|PSU|366
8QOI|1|S2|U|367
8QOI|1|S2|U|368
8QOI|1|S2|C|369
8QOI|1|S2|G|370
8QOI|1|S2|A|371
*
8QOI|1|S2|U|393
8QOI|1|S2|G|394
8QOI|1|S2|G|395

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11