IL_8QOI_225

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

C(PSU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_225 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1621

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8QOI|1|S2|C|608
8QOI|1|S2|PSU|609
8QOI|1|S2|G|610
*
8QOI|1|S2|C|633
8QOI|1|S2|A|634
8QOI|1|S2|G|635

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein