IL_8QOI_228
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GU(PSU)(A2M)AAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 8QOI|1|S2|U|666
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_228 not in the Motif Atlas
- Homologous match to IL_8C3A_426
- Geometric discrepancy: 0.2494
- The information below is about IL_8C3A_426
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.4
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8QOI|1|S2|G|665
8QOI|1|S2|U|666
8QOI|1|S2|PSU|667
8QOI|1|S2|A2M|668
8QOI|1|S2|A|669
8QOI|1|S2|A|670
8QOI|1|S2|A|671
*
8QOI|1|S2|U|1161
8QOI|1|S2|C|1162
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
Coloring options: