IL_8QOI_245
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AGG(PSU)(PSU)C*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_245 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.3414
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8QOI|1|S2|A|1042
8QOI|1|S2|G|1043
8QOI|1|S2|G|1044
8QOI|1|S2|PSU|1045
8QOI|1|S2|PSU|1046
8QOI|1|S2|C|1047
*
8QOI|1|S2|G|1071
8QOI|1|S2|U|1072
8QOI|1|S2|U|1073
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
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