IL_8QOI_277
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8QOI|1|S2|C|1701, 8QOI|1|S2|A|1835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_277 not in the Motif Atlas
- Homologous match to IL_8C3A_470
- Geometric discrepancy: 0.0639
- The information below is about IL_8C3A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QOI|1|S2|C|1700
8QOI|1|S2|C|1701
8QOI|1|S2|G|1702
*
8QOI|1|S2|C|1833
8QOI|1|S2|A|1834
8QOI|1|S2|A|1835
8QOI|1|S2|G|1836
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SO
- 40S ribosomal protein S14
- Chain SQ
- 40S ribosomal protein S16
- Chain Sa
- 40S ribosomal protein S26
Coloring options: