IL_8QOI_301

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AGA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_301 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.3217

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8QOI|1|L5|A|1749
8QOI|1|L5|G|1750
8QOI|1|L5|A|1751
*
8QOI|1|L5|PSU|1779
8QOI|1|L5|A|1780
8QOI|1|L5|PSU|1781

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

60S ribosomal protein L10-like