IL_8QOI_311

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_311 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2246

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8QOI|1|L5|PSU|3715
8QOI|1|L5|C|3716
8QOI|1|L5|A|3717
8QOI|1|L5|A2M|3718
8QOI|1|L5|A|3719
8QOI|1|L5|G|3720
8QOI|1|L5|U|3721
*
8QOI|1|L5|A|3732
8QOI|1|L5|A|3733
8QOI|1|L5|U|3734
8QOI|1|L5|G|3735
8QOI|1|L5|A|3736
8QOI|1|L5|A|3737
8QOI|1|L5|G|3738

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36