IL_8QOI_312

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8QOI|1|L5|A2M|3785, 8QOI|1|L5|C|3791, 8QOI|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_312 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.0669

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8QOI|1|L5|C|3781
8QOI|1|L5|5MC|3782
8QOI|1|L5|A|3783
8QOI|1|L5|A|3784
8QOI|1|L5|A2M|3785
8QOI|1|L5|U|3786
8QOI|1|L5|G|3787
8QOI|1|L5|C|3788
8QOI|1|L5|C|3789
8QOI|1|L5|U|3790
8QOI|1|L5|C|3791
8QOI|1|L5|OMG|3792
*
8QOI|1|L5|OMC|3808
8QOI|1|L5|G|3809
8QOI|1|L5|C|3810
8QOI|1|L5|G|3811

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA