IL_8QOI_331

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_331 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.0835

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8QOI|1|S2|C|459
8QOI|1|S2|A|460
8QOI|1|S2|U|461
*
8QOI|1|S2|A2M|468
8QOI|1|S2|A|469
8QOI|1|S2|G|470

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24